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Computational Biomedicine Lab

Computational Biomedicine Lab

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COMPUTATIONAL BIOMEDICINE LAB
University of Houston
4349 MLK Blvd, Rm 322
Houston, TX 77204-6022

 

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Publications

2020

Conference Papers 
  • H. Le, C. Smailis, L. Shi, and I. A. Kakadiaris, “EDGE20: A Cross spectral evaluation dataset for multiple surveillance problems,” in Proc. IEEE Winter Conference on Applications of Computer Vision, Snowmass Village, CO, Mar. 1-5 2020, pp. 1-10.

2019

Journal Papers
  • L. Shi, X. Xu and I. A. Kakadiaris. “SSFD+: A Two-Stage Robust Face Detector,” IEEE Transactions on Biometrics, Behavior, and Identity Science, 1(3), 181-191, 2019.
Conference Papers 
  • N. Sarafianos, X. Xu and I. A. Kakadiaris, "Adversarial Representation Learning for Text-to-Image Matching,'' In Proc. IEEE International Conference on Computer Vision, Seoul, South Korea, October 27 - November 2, 2019
  • L. Shi, X. Xu and I. A. Kakadiaris. “SANet: Smoothed Attention Network for Single-stage Face Detector,” In Proc. IEEE International Conference on Biometrics, Crete, Greece, June 4-7, 2019.
  • L. Shi, X. Xu and I. A. Kakadiaris. “SEFD: A Simple and Effective Single-stage Face Detector,” In Proc. IEEE International Conference on Biometrics, Crete, Greece, June 4-7, 2019.
  • C. Smailis, M. Vrigkas, and I.A. Kakadiaris, “RECASPIA: REcognizing Carrying Actions in Single images
    using Privileged InformAtion,” in Proc. IEEE International Conference on Image Processing, 2019, pp. 26–30.
  • H. Le and I. A. Kakadiaris, “Semi-supervised low light face enhancement for mobile face unlock,” in Proc. IAPR International Conference on Biometrics, Crete, Greece, June 4-7 2019.
  • A. Memariani, B.T. Endres, E. Bassres, K.W. Garey, and I.A. Kakadiaris, “RISEC: Rotational invariant segmentation of elongated cells in SEM images with inhomogeneous illumination,” in Proc. International
    Symposium on Visual Computing, Lake Tahoe, Nevada, October 7-9 2019, pp. 553–563.
  • X. Xu and I.A. Kakadiaris, “FaRE: Open source face recognition performance evaluation package,” in Proc.
    International Conference on Image Processing, Sept. 22-25 2019, pp. 3272–3276.
  • Y. Wu and I. A. Kakadiaris, “Occlusion-guided compact template learning for ensemble deep network-based pose-invariant face recognition,” in Proc. IAPR International Conference on Biometrics, Crete, Greece, June 4-7 2019.
  • H. Le and I. A. Kakadiaris, “Illumination-invariant Face Recognition with Deep Relit Face Images,” in Proc. IEEE Winter Conference on Applications of Computer Vision, Waikoloa Village, HI, Jan. 8-10 2019, pp. 2146–2155.
  • X. Xu, H. Le, and I. A. Kakadiaris, “On the Importance of Feature Aggregation for Face Reconstruction,” in Proc. IEEE Winter Conference on Applications of Computer Vision, Waikoloa Village, HI, Jan. 8-10 2019, pp. 922–931.

2018

Journal Papers
  • L. Zhang, P. Dou, and I.A. Kakadiaris, “Patch-based face recognition using a hierarchical multi-label matcher,” Image and Vision Computing, 2018.
  • N. Sarafianos, T. Giannakopoulos, C. Nikou and I. A. Kakadiaris, “Curriculum Learning of Visual AttributeClusters for Multi-Task Classification", Pattern Recognition 2018 [ Bibtex ]
  • I.A. Kakadiaris, M. Vrigkas, M. Budoff, A. Yen, and M. Naghavi, “Machine learning outperforms ACC/AHA CVD risk calculator in MESA,” Journal of the American Heart Association, 2018.
  • P. Dou, Y. Wu, S.K. Shah, and I.A. Kakadiaris, “Monocular 3D facial shape reconstruction from a single 2D image with coupled-dictionary learning and sparse coding,” Computer Vision and Image Understanding, 2018.
Conference papers
  • M. Vrigkas, E. Mastora, C. Nikou, and I. A. Kakadiaris, “Robust incremental hidden conditional random fields for human action recognition,” in Proc. International Symposium on Visual Computing, Las Vegas, NV, Nov. 19-21 2018.
  • M. Leng and I.A. Kakadiaris, “Recursive binary template embedding for face image set,” in Proc. IEEE International Conference on Biometrics: Theory, Applications, and Systems, Oct. 25-28 2018.
  • L. Shi, X. Xu, and I.A. Kakadiaris, “SSFD: a face detector using a single-scale feature map,” in Proc. IEEE International Conference on Biometrics: Theory, Applications, and Systems, Oct. 25-28 2018.
  • A. Memariani and I.A. Kakadiaris, “SoLiD: Segmentation of Clostridioides Difficile Cells in the Presence of Inhomogeneous Illumination using a Deep Adversarial Network,” in Proc. International Workshop on Machine Learning in Medical Imaging, Held in Conjunction with MICCAI, Granada, Spain, Sept 16 2018, pp. 285–293.
  • N. Sarafianos, X. Xu, and I.A. Kakadiaris, “Deep imbalanced attribute classification using visual attention aggregation,” in Proc. IEEE European Conference on Computer Vision, Sept. 8-14 2018.
  • M. Leng and I. A. Kakadiaris, “Confidence driven network for point-to-set matching,” in Proc. IAPR International Conference on Pattern Recognition, pp. 1-7, Beijing, China, Aug. 24-28 2018 [ Bibtex ]
  • A. Memariani, C. Nikou, B. T. Endres, E. Bassères, K. W. Garey, I. A. Kakadiaris, “DETCIC: Detection of Elongated Touching Cells with Inhomogeneous Illumination using a Stack of Conditional Random Fields,” In Proc. International Conference on Computer Vision Theory and Applications, Funchal, Maderia, Portugal, Jan 27–29, 2018[ Bibtex ]
  • O. Magaña-Tellez, M. Vrigkas, C. Nikou and I.A. Kakadiaris, “SPICE: Superpixel classification for cell detection and counting,” in Proc. 13th International Conference on Computer Vision Theory and Applications, Funchal, Madeira, Portugal, January 27-29 2018 [ Bibtex ]

2017

Journal Papers
Conference papers
Arxiv
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2016

Journal Papers
Conference papers
  • A. Memariani, C. Nikou, B.T. Endres, E. Bassères, K.W. Garey, I.A. Kakadiaris, "DeTEC: Detection of Touching Elongated Cells in SEM Images," in Proc. 12th International Symposium on Visual Computing, pp 288-297, Las Vegas, NV, Dec 12-14, 2016 [ Bibtex]
  • A. Baez-Su´arez, C. Nikou, J. A. Nolazco-Flores, and I. A. Kakadiaris, “Age classification from facial images: Is frontalization necessary?” in Advances in Visual Computing, Las Vegas, NV, Dec. 10, 2016, pp. 769–778.
  • N. Sarafianos, C. Nikou, and I.A. Kakadiaris, "Predicting Privileged Information for Height Estimation," in Proc. International Conference on Pattern Recognition, Cancún, Mexico, Dec. 4-8 2016 [ Bibtex ]
  • P. Moutafis, M. Leng and I. A. Kakadiaris, "Regression-based metric learning,"  in Proc. International Conference on Pattern Recognition, pp. 2700-2705, Cancún, Mexico, Dec. 4-8 2016. [Bibtex ]
  • M. Vrigkas, C. Nikou and I.A. Kakadiaris, “Active privileged learning of human activities from weakly labeled samples,” in Proc. 23rd IEEE International Conference on Image Processing, pp. 3036-3040, Phoenix, AZ, USA, September 25-28, 2016.[ Bibtex ]
  • I.A. Kakadiaris, N. Sarafianos and C. Nikou, "Show me your body: Gender classification from still images," in Proc. International Conference on Image Processing, Phoenix, AZ, Sept. 25-28 2016 [ Bibtex ]
  • I.A. Kakadiaris, M.M. Islam, T. Xie, C. Nikou, and A.B. Lumsden, " iRay: Mobile AR Using Structure Sensor," In Adjunct Proc. 15th IEEE International Symposium on Mixed and Augmented Reality, Merida, Mexico, September 19-23, pp. 127-128, 2016. [ Bibtex ]
  • M. Vrigkas, C. Nikou and I.A. Kakadiaris, “Exploiting privileged information for facial expression recognition,” in Proc. 9th IAPR/IEEE International Conference on Biometrics, pp. 1-8, Halmstad, Sweden, June 13-16, 2016, Best Paper Award.[ Bibtex ]
  • X. Xu, S.K. Shah, and I.A. Kakadiaris, “Face alignment via an ensemble of random ferns,” in Proc. IEEE International Conference on Identity, Security and Behavior Analysis, Sendai, Japan, Feb. 29 - Mar. 2 2016. [ Bibtex ]
  • Y. Wu, P. Dou, S.K. Shah, and I.A. Kakadiaris, “Rendering or normalization? An analysis of 3D-aided pose-invariant face recognition,” in Proc. IEEE International Conference on Identity, Security and Behavior Analysis, Sendai, Japan, Feb. 29 - Mar. 2 2016.
  • K. N. Tran, Xu Yan, I. A. Kakadiaris, and S. K. Shah, “A hybrid approach for individual and group activity analysis in crowded scene,” in Computer Vision, Imaging and Computer Graphics Theory and Applications, Jos´e Braz, Julien Pettr´e, Paul Richard, Andreas Kerren, Lars Linsen, Sebastiano Battiato, and Francisco Imai, Eds., vol. 598. Springer International Publishing, Jan 2016, pp. 189–204.
  • P. Moutafis, M. Leng and I. A. Kakadiaris, "Regression-based metric learning,"  in Proc. International Conference on Pattern Recognition, pp. 2700-2705, Cancún, Mexico, Dec. 4-8 2016. [Bibtex ]
Book Chapters
  • E.G. Mendizabal-Ruiz and I.A. Kakadiaris, “Differential imaging for the detection of extra-luminal blood perfusion due to vasa vasorum,” in Trends and Challenges in Vascular And Intravascular Imaging and Analysis, P. Radeva and J.S. Suri, Eds., (In Press).
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2015

Journal Papers
Conference papers
  • Y. Wu, X. Xu, S.K. Shah, and I.A. Kakadiaris, “Towards fitting a 3D dense facial model to 2D image without landmarks,” in Proc. 7th International Conference on Biometrics: Theory, Application and Systems, Arlington, VA, Sep 8-11 2015.
  • G. Balikas, A. Kosmopoulos, A. Krithara, G. Paliouras, and I.A. Kakadiaris, “Results of the BioASQ tasks of the question answering lab at CLEF 2015,” in Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), Toulouse, France, Sept 8-11 2015
  • M. Leng, P. Moutafis, and I.A. Kakadiaris, “Joint prototype and metric learning for set-to-set matching: Application to biometrics,” in Proc. 7th International Conference on Biometrics: Theory, Application and Systems, Arlington, VA, Sept 8–11 2015. [ Bibtex ]
  • P. Dou, L. Zhang, Y. Wu, S.K. Shah, and I.A. Kakadiaris, “Pose-robust face signature for multi-view face recognition,” in Proc. 7th International Conference on Biometrics: Theory, Applications and Systems, Arlington, VA, Sep. 8-11 2015, pp. 1 – 8.
  • L.F. Zhang, P.F. Dou, S.K. Shah, , and I.A. Kakadiaris, “Hierarchical multi-label framework for robust face recognition,” in Proc. International Conference on Biometrics, Phuket, Thailand, May 19-22 2015.
  • P. Moutafis M. Leng and I.A. Kakadiaris, “Joint Prototype and Metric Learning for Set-To-Set Matching: Application to Face Identification,” in Proc. 7th International Conference on Biometrics: Theory, Applications and Systems, September 8-11 2015.
  • P. Hernandez and I.A. Kakadiaris, “A pre-processing step to improve the segmentation of spines,” in Proc. IEEE International Symposium on Biomedical Imaging, Brooklyn, NY, Apr. 16-19 2015.
  • P. Moutafis and I.A. Kakadiaris, “Rank-based score normalization for multi-biometric score fusion,” in Proc. 8th International Symposium on Technologies for Homeland Security, Apr. 14-15 2015, pp. 1–6, Best Paper 14 Award
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2014

Journal Papers

  • B.A. Almogahed and I.A. Kakadiaris, “NEATER: Filtering of over-sampled data using non-cooperative game theory,” Soft Computing, 2014 (In Press).
  • Y.H. Le, U. Kurkure, and I.A. Kakadiaris, “PDM-ENLOR for Segmentation of Mouse Brain Gene Expression Images,” Medical Image Analysis, 2014 (In Press).
  • D.R. Chittajallu, N. Paragios, and I.A. Kakadiaris, “An explicit shape-constrained MRF-based contour evo- lution method for 2D medical image segmentation,” IEEE Journal of Biomedical and Health Informatics, vol. 18, no. 1, pp. 120 – 129, 2014.
  • S. Balocco, C. Gatta, F. Ciompi, A. Wahle, P. Radeva, S. Carlier, G. Unal, E. Sanidas, F. Mauri, X. Carillo, T. Kovarnik, C.-W. Wang, H.-C. Chen, T.P. Exarchos, D.I. Fotiadis, F. Destrempes, G. Cloutier, O. Pujol, M. Alberti, E.G. Mendizabal-Ruiz, M. Rivera, T. Aksoy, R. Downe, and I.A. Kakadiaris, “Standardized evaluation methodology and reference database for evaluating IVUS image segmentation,” in Computerized Medical Imaging and Graphics, vol. 38, no. 2, Barcelona, Spain, 2014, pp. 70 – 90.
  • M. Vrigkas, V. Karavasilis, C. Nikou, and I.A. Kakadiaris, “Matching mixtures of curves for human action recognition,” Computer Vision and Image Understanding, vol. 119, pp. 27–40, 2014.
  • P. Perakis, T. Theoharis, and I.A. Kakadiaris, “Feature fusion for facial landmark detection,” Pattern Recognition, vol. 47, no. 9, pp. 2783–2793, 2014.
  • K.N. Tran, A. Gala, I.A. Kakadiaris, and S.K. Shah, “Activity analysis in crowded environments using social cues for group discovery and human interaction modeling,” Pattern Recognition Letters, vol. 44, pp. 49–57, Jul. 2014.
  • X. Zhao, G. Evangelopoulos, D. Chu, S. Shah, and I.A. Kakadiaris, “Minimizing illumination differences for 3D to 2D face recognition using lighting maps,” IEEE Transactions on Cybernetics, vol. 44, no. 5, pp. 725–736, May 2014.
  • X. Yan, I. A. Kakadiaris, and S. K. Shah, “Modeling local behavior for predicting social interactions towards human tracking,” Pattern Recognition, vol. 47, no. 4, pp. 1626–1641, Apr. 2014.
Conference papers
  • M.A. Ochoa-Villegas, J.A. Nolazco-Flores, O. Barron-Cano, and I.A. Kakadiaris, “BEMD-based unlighting preprocessing method for face recognition,” in Proc. IEEE International Workshop on Information Forensics and Security, Dec. 3–5 2014.
  • A. Morton, E. Marzban, G. Giannoulis, A. Patel, R. Aparasu, and I.A. Kakadiaris, “A comparison of supervised machine learning techniques for predicting short-term in-hospital length of stay among diabetic patients,” in Proc. International Conference on Machine Learning and Applications, Dec. 3–6 2014, pp. 428 – 431.
  • P. Moutafis and I.A. Kakadiaris, “Semi-coupled basis and distance metric learning for cross-domain matching: Application to low-resolution face recognition,” in Proc. International Joint Conference on Biometrics, Sep. 29 - Oct. 2 2014.
  • B.A. Almogahed and I.A. Kakadiaris, “Empowering imbalanced data in supervised learning: A semisupervised learning approach,” in Proc. International Conference on Artificial Neural Networks and Machine Learning, Sep. 15-19 2014, pp. 523–530.
  • X. Yan, S. Shah, and I.A. Kakadiaris, “What do I see? Modeling human visual perception for multi-person tracking,” in Proc. European Conference on Computer Vision, Sep. 5-12 2014.
  • P. Dou, Y. Wu, S.K. Shah, and I.A. Kakadiaris, “Robust 3D face shape reconstruction from single images via two-fold coupled structure learning,” in Proc. British Machine Vision Conference, Nottingham, UK, Sept 1-5 2014.
  • L. Zhang, S.K. Shah, and I.A. Kakadiaris, “Fully associative ensemble learning for hierarchical multi-label classification,” in Proc. British Machine Vision Conference, Sept 1-5 2014.
  • P. Dou, Y. Wu, S.K. Shah, and I.A. Kakadiaris, “Benchmarking 3D pose estimation for face recognition,” in Proc. IEEE International Conference on Pattern Recognition, Stockholm, Sweden, Aug. 24-28 2014.
  • B.A. Almogahed and I.A. Kakadiaris, “NEATER: Filtering of over-sampled data using non-cooperative game theory,” in Proc. International Conference of Pattern Recognition, Aug. 24-28 2014.
  • G. Giannoulis, S. Yotov, M. Naghavi, M. Budoff, and I.A. Kakadiaris, “Learning a classifier for cardiovascular events using privileged information,” in Proc. Pervasive Technologies Related to Assistive Environments, May 27-30 2014.
  • P. Moutafis and I.A. Kakadiaris, “Towards intelligent decision making for risk screening,” in Proc. International Conference on Pervasive Technologies Related to Assistive Environments, May 27-30 2014.
  • L.F. Zhang, S.K. Shah, and I.A. Kakadiaris, “Fully associative ensemble learning for hierarchical multi-label classification,” in Proc. British Machine Vision Conference, May 19-22 2014.
  • M. Vrigkas, C. Nikou, and I.A. Kakadiaris, “Classifying behavioral attributes using conditional random fields,” in Proc. Hellenic Conference of Artificial Intelligence, May 15-17 2014, pp. 95–104.
  • P. Moutafis and I.A. Kakadiaris, “GS4: Generating synthetic samples for semi-supervised nearest neighbor classification,” in Proc. Pacific-Asia Conference on Knowledge Discovery and Data Mining Workshop on Scalable Data Analytics: Theory and Algorithms, May 13-16 2014, pp. 393 – 403.
  • P. Hernandez-Herrera, M. Papadakis, and I.A. Kakadiaris, “Segmentation of neurons based on one-class classification,” in Proc. IEEE International Symposium on Biomedical Imaging, Apr. 28 - May 02 2014, pp. 1316 – 1319.
  • Y.H. Le, M. Bondesson, N. Ducharme, and I.A. Kakadiaris, “A framework for building multi-tissue atlas of zebrafish embryo,” in Proc. IEEE International Symposium on Biomedical Imaging, Apr. 28 - May 02 2014.
  • P. Moutafis and I.A. Kakadiaris, “Rank-based score normalization for multi-biometric score fusion,” in Proc. 8th International Symposium on Technologies for Homeland Security, Waltham, MA, April 14-15 2015.
Book Chapters
  • D. Chu, S.K. Shah, and I.A. Kakadiaris, “3D face recognition for partial data using semi-coupled dictionary learning,” in Face Recognition in Adverse Conditions, M. Tistarelli M. D. Marsico, M. Nappi, Ed., 2014.
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2013

Journal Papers
Conference papers
  • G. Toderici, G. Evangelopoulos, T. Fang, T. Theoharis, and I.A. Kakadiaris, “UHDB11 database for 3D-2D face recognition,” in Pacific-Rim Symposium on Image and Video Technology, Oct. 28 2013, pp. 73 – 86.
  • Y.H. Le, U. Kurkure, and I.A. Kakadiaris, “PDM-ENLOR: Learning Ensemble of Local PDM-Based Regressions,” in Proc. IEEE Conference on Computer Vision and Pattern Recognition, Portland, OR, June 23-28 2013, pp. 1878 – 1885.
  • P. Moutafis and I.A. Kakadiaris, “Can we do better in unimodal biometric systems? A novel rank-based score normalization framework for multi-sample galleries,” in Proc. International Conference on Biometrics, Jun. 4-7 2013, pp. 1 – 8.
  • V. Christlein, C. Riess, E. Angelopoulou, G. Evangelopoulos, and I.A. Kakadiaris, "The impact of specular highlights on 3D-2D face," in Proc. SPIE Biometric and Surveillance Technology for Human and Activity Identification X, vol. 8712, Baltimore, ND, April 29 - May 3 2013, pp. 1-13.
  • M. Meyer, C. Riess, E. Angelopoulou, G. Evangelopoulos, and I.A. Kakadiaris, "Color constancy in 3D-2D face recognition," in Proc. SPIE Biometric and Surveillance Technology for Human and Activity Identification X, vol. 8712, Baltimore, ND, April 29 - May 3 2013, pp. 1-9.
  • E. Bilgazyev, U. Kurkure, S. K. Shah, and I. A. Kakadiaris, "ASIE: Application specific image enhancement for face recognition," in Proc. SPIE Biometric and Surveillance Technology for Human and Activity Identification X, vol. 8712, Baltimore, ND, April 29 - May 3 2013, pp. 1-9.
  • D. Chu, S. Shah, and I.A. Kakadiaris, "3D face recognition for partial data using semi-coupled dictionary learning," in Proc. 10th International Conference on Automatic Face and Gesture Recognition, Shanghai, China, April 22-26 2013, pp. 1-8.
  • X. Zhao, S.K. Shah, and I. A. Kakadiaris, "Illumination alignment using lighting ratio: Application to 3D-2D face recognition," in Proc. IEEE International Conference on Automatic Face and Gesture Recognition, Shanghai, China, April 22-26 2013, pp. 1-6.
  • D. Jimenez, E. Papadakis, D. Labate, and I.A. Kakadiaris, "Improved automatic centerline tracing for dendritic structures," In Proc. IEEE Int. Symp. on Biomedical Imaging: From nano to macro, April 7-11 2013.
  • K.N. Tran, A. Gala, I.A. Kakadiaris, and S.K. Shah, "Social cues in group formation and local interactions for collective activity analysis," in Proc. 8th International Conference on Computer Vision Theory and Applications, Barcelona, Spain, February 21-24 2013, VISAPP Best Paper Award.
  • M.Vrigkas, V. Karavasilis, C. Nikou, and I.A. Kakadiaris, "Action recognition by matching clustered trajectories of motion vectors," in Proc. 8th International Conference on Computer Vision Theory and Applications, Barcelona, Spain, February 21-24 2013, pp. 112-117. 
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2012

Journal Papers
  • T. Fang, X. Zhao, O. Ocegueda, S.K. Shah, and I.A. Kakadiaris, "3D/4D facial expression analysis: An advanced annotated face model approach," Image and Vision Computing, vol. 30, no. 10, pp. 738-749, October 2012.
  • I.A Kakadiaris, "A third dimension in face recognition," SPIE Newsroom, June 20 2012.
  • K.N. Tran, I.A. Kakadiaris, and S.K. Shah, "Part-based motion descriptor image for human action recognition," Pattern Recognition, vol. 45, no. 7, pp. 2562-2572, 2012.
  • B. Efraty, E. Bilgazyev, S.K. Shah, and I.A. Kakadiaris, "Profile-based 3D-aided face recognition," Pattern Recognition, vol. 45, no. 1, pp. 43-53, 2012.
  • E.G. Mendizabal-Ruiz, T. Papaioannou, M. Vavuranakis, C. Stefanadis, M. Naghavi, and I.A. Kakadiaris, "Analysis of contrast-enhanced intravascular ultrasound images for the assessment of coronary plaqueneoangiogenesis: Another step closer to the identifcation of vulnerable plaque," Current Pharmaceutical Design, vol. 18, no. 15, pp. 2207-2213, 2012.
Conference papers
  • S. Upadhyay, M. Papadakis, S. Jain, G.W. Gladish, I.A. Kakadiaris, and R. Azencott, "Semi-automatic discrimination of normal tissue and liver cancer lesions in contrast enhanced X-ray CT-scans," in Proc. Computational and Clinical Applications in Abdominal Imaging, H. Yoshida, D. Hawkes, and M. Vannier, Eds., vol. 7601. Springer, 2012, pp. 158-167.
  • R. Mehrotra, D. Chu, S.A. Haider, and I.A. Kakadiaris, "Towards learning coupled representations for cross-lingual information retrieval," in Proc. Neural Information Processing Systems Workshop xLiTe: Cross-Lingual Technologies, Lake Tahoe, Nevada, USA, December 3-8 2012.
  • C. Huang, B.A. Efraty, U. Kurkure, M. Papadakis, S.K. Shah, and I.A. Kakadiaris, "Facial landmark configuration for improved detection," in Proc. IEEE International Workshop on Information Forensics and Security, Tenerife, Spain, Dec. 2-5 2012, pp. 13-18.
  • X. Zhao, S.K. Shah, and I.A. Kakadiaris, "Illumination normalization using self lighting ratios for 3D-2D face recognition," in Proc. European Conference on Computer Vision Workshop What's in a Face, Florence, Italy, Oct. 7-13 2012, pp. 220-229.
  • X. Yan, I.A. Kakadiaris, and S.K. Shah, "To track or to detect? an ensemble framework for optimal selection," in Proc. European Conference on Computer Vision, Florence, Italy, October 7-13 2012.
  • E.G. Mendizabal-Ruiz and I.A. Kakadiaris, "Probabilistic segmentation of the lumen from intravascular ultrasound radio frequency data," in Proc. 15th International Conference on Medical Image Computing and Computer Assisted Intervention, Nice, France, Oct. 1-5 2012.
  • Y.H. Le, U. Kurkure, N. Paragios, T. Ju, J.P. Carson, and I.A. Kakadiaris, "Similarity-based appearance prior for fitting a subdivision mesh in gene expression images," in Proc. 15th International Conference on Medical Image Computing and Computer Assisted Intervention, vol. 7510, Nice, France, October 1-5 2012, pp. 577-584.
  • E. Zacharia, M. Bondesson, J.A. Gustafsson, and I.A. Kakadiaris, "Segmentation of zebrafish embryonic images using a geometric atlas deformation," in Proc. 34rd Annual Conference of the IEEE Engineering in Medicine and Biology Society, San Diego, California, Aug 28-Sept.1 2012, pp. 3998-4001.
Book Chapters
  • P. Hernandez-Herrera, D. Jimenez, I.A. Kakadiaris, A. Koutsogiannis, D. Labate, F. Laezza, and M. Papadakis, "A harmonic analysis view on neuroscience imaging," in Excursions in Harmonic Analysis, T. Andrews, R.V. Balan, J.J. Benedetto, W. Czaja, and K. Okoudjou, Eds., 2012, vol. 2, pp. 423 - 450.
  • I.A. Kakadiaris and E.G. Mendizabal-Ruiz, "Cardiovascular informatics: A perspective on promises and challenges of IVUS data analysis," in Optimization & Data Analysis in Biomedical Informatics, T.F. Coleman, P.M. Pardalos, and P. Xanthopoulos, Eds. American Math Society, 2012, vol. 63, no. 15, pp. 2207 - 2213.
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2011

Journal Papers
  • G. Passalis, P. Perakis, T. Theoharis, and I.A. Kakadiaris, "Using facial symmetry to handle pose variations in real-world 3D face recognition," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 33, no. 10, pp. 1938 - 1951, 2011.
  • Xi Zhao, Emmanuel Dellandrea, Liming Chen, and Ioannis A. Kakadiaris, "Accurate landmarking of three-dimensional facial data in the presence of facial expressions and occlusions using a three-dimensional statistical facial feature model", IEEE Transactions on System, Man, and Cybernetics, Part B: Cybernetics, vol. 41, no. 5, pp. 1417-1428 , 2011.
  • X. Zhao, E. Dellandrea, L. Chen, and I.A. Kakadiaris, "Accurate landmarking of three-dimensional facial data in the presence of facial expressions and occlusions using a three-dimensional statistical facial feature model," IEEE Transactions on System, Man, and Cybernetics, Part B: Cybernetics, vol. 41, no. 5, pp. 1417-1428, Oct. 2011.
  • L.M. Kindle, I.A. Kakadiaris, J.P. Carson, and T. Ju, "A semi-automated approach for artifact removal in serial tissue cryosections," Journal of Microscopy, vol. 241, no.2, pp. 200-206, 2011.
Conference papers
  • T. Bourlai, C. Whitelam, and I.A. Kakadiaris, "Pupil detection under lighting and pose variations in the visible and active infrared bands," in Proc. IEEE International Workshop on Information Forensics and Security, Foz do Iguacu, Brazil, Nov. 29 - Dec. 2 2011.
  • M. Amer, E. Bilgazyev, S. Todorovic, S.K. Shah, I.A. Kakadiaris, and L. Ciannelli, "Fine-grained categorization of events in underwater videos by tracking fish," in Proc. International Workshop on Dynamic Shape Capture and Analysis, Barcelona, Spain, Nov. 6-13 2011.
  • T. Fang, X. Zhao, S.K. Shah, and I.A. Kakadiaris, "4D facial expression recognition," in Proc. IEEE Workshop on Dynamic Shape Capture and Analysis, Barcelona, Spain, Nov. 6-13 2011.
  • O. Ocegueda, T. Fang, S.K. Shah, and I.A. Kakadiaris, "Expressive maps for 3D facial expression recognition," in Proc. IEEE Workshop on Human Interaction in Computer Vision, Barcelona, Spain, Nov. 6-13 2011.
  • C. Wang and Y. Zeng and L. Simon and I.A. Kakadiaris and D. Samaras and N. Paragios, "Viewpoint invariant 3D model inference from monocular 2D images using higher-order priors," in Proc. IEEE International Conference on Computer Vision, Barcelona, Spain, Nov. 6-13 2011.
  • U. Kurkure, Y.L. Hai, N. Paragios, J.P Carson, T. Ju, and I.A. Kakadiaris, "Subdivision-based deformable model for geometric atlas fitting," in Proc. IEEE International Conference on Computer Vision, Barcelona, Spain, Nov. 6-13 2011.
  • B. Efraty, C. Huang, S.K. Shah, and I.A. Kakadiaris, "Facial landmark detection in uncontrolled conditions," in Proc. International Joint Conference on Biometrics, Washington DC, Oct. 11-13 2011.
  • E. Bilgazyev B. Efraty, S.K. Shah, and I.A. Kakadiaris, "Improved face recognition using super-resolution," in Proc. International Joint Conference on Biometrics, Washington DC, Oct. 11-13 2011.
  • O. Ocegueda, G. Passalis, T. Theoharis, S.K. Shah, and I.A. Kakadiaris, "UR3D-C: Linear Dimensionality Reduction for Efficient 3D Face Recognition," in Proc. International Joint Conference on Biometrics, Washington DC, Oct. 11-13 2011.
  • V. Vijayan, K. Bowyer, P. Flynn, D. Huang, L. Chen, O. Ocegueda, S.K. Shah, and I.A. Kakadiaris, "Twins 3D face recognition challenge," in Proc. International Joint Conference on Biometrics, Washington DC, Oct. 11-13 2011.
  • E.G. Mendizabal-Ruiz, G. Biros, and I.A. Kakadiaris, "Towards extra-luminal blood detection from IVUS RF data," in Proc. 14th International Conference on Medical Image Computing and Computer Assisted Intervention, Toronto, Canada, Sep. 18-22 2011, pp. 396-403.
  • B. Efraty, M. Papadakis, A. Prott, S. Shah, I.A. Kakadiaris "Pose invariant facial component landmark detection," Proc. IEEE International Conference on Image Processing, Brussels, Belguim, September 11-14, 2011
  • I.A. Kakadiaris, E.G. Mendizabal Ruiz, T.G. Papaioannou, M. Vavuranakis, C. Stefanadis, and M. Naghavi, "Challenges and oppurtunities for the detection of neovascularization in IVUS data," in Proc. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Boston, MA, Aug. 30 - Sep. 3 2011.
  • E. Zacharia, M. Bondesson, A. Riu, N.A. Ducharme, and I.A. Kakadiaris, "Automatic segmentation of 3D time-lapse microscopy images depicting a live Dharma embryo," in Proc. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Boston, MA, Aug. 30 - Sep. 3 2011.
  • M.A. Enlow, T. Ju, I.A. Kakadiaris, and J.P. Carson, "Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain," in Proc. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Boston, MA, Aug. 30 - Sep. 3 2011.
  • X. Yan, I.A. Kakadiaris, and S.K. Shah, "Predicting social interactions for visual tracking," in Proc. British Machine Vision Conference, Dundee, UK, Aug. 29 - Sep. 2 2011.
  • K.N. Tran, I.A. Kakadiaris, and S.K. Shah, "Modeling motion of body parts for action recognition," in Proc. British Machine Vision Conference, Dundee, UK, Aug. 29 - Sep. 2 2011.
  • E. Bilgazyev, B. Efros, S.K. Shah, and I.A. Kakadiaris, "Sparse representation based super-resolution for face recognition at a distance," in Proc. British Machine Vision Conference, Dundee, UK, Aug. 29 - Sep. 2 2011.
  • O. Ocegueda, S.K. Shah, and I.A. Kakadiaris, "Which parts of the face give out your identity?," in Proc. IEEE Computer Vision and Pattern Recognition, Colorado Springs, CO, Jun. 21-23 2011, pp. 641-648.
  • U. Kurkure, Y. H. Le, N. Paragios, J. P. Carson, T. Ju, and I. A. Kakadiaris, "Landmark/Image-based Deformable Registration of Gene Expression Data," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 1089--1096, Colorado Springs, CO, June 21-23 2011, pp. 1089-1096.
  • O.C. Avila-Montes U. Kurkure, R. Nakazato, D.S. Berman, D. Dey, and I.A. Kakadiaris, "Cascaded regression for CT slice localization," in Proc. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Chicago, Illinois, Mar. 30 - Apr. 2 2011, pp. 1881-1884.
  • E. Bilgazyev, S.K. Shah, and I.A. Kakadiaris, "Comparative evaluation of wavelet based super-resolution from video for face recognition at a distance," in Proc. IEEE International Conference on Automatic Face and Gesture Recognition, Santa Barbara, CA, Mar. 21-25 2011, pp. 559-565.
  • B. Efraty, M. Papadakis, A. Profitt, S.K. Shah, and I.A. Kakadiaris, "Facial component landmark detection," in Proc. IEEE International Conference on Automatic Face and Gesture Recognition, Santa Barbara, CA, Mar. 21-25 2011, pp. 278-285.
  • T. Fang, X. Zhao, O. Ocegueda, S.K. Shah, and I.A. Kakadiaris, "3D facial expression recognition: A perspective on promises and challenges," in Proc. IEEE International Conference on Automatic Face and Gesture Recognition, Santa Barbara, CA, Mar. 21-25 2011, pp. 603-610.
Book Chapters
  • I.A. Kakadiaris, G. Passalis, G. Toderici, E. Efraty, P. Perakis, D. Chu, S. K. Shah, and T. Theoharis, "Face recognition using 3D images," in Handbook of Face Recognition, S. Z. Li and A. K. Jain, Eds. Cambridge University Press, 2011, pp. 429-459.
  • I.A. Kakadiaris, G. Passalis, G. Toderici, E. Efraty, P. Perakis, D. Chu, S. K. Shah, and T. Theoharis, "Face recognition using 3D images," in Handbook of Face Recognition, S. Z. Li and A. K. Jain, Eds. Cambridge University Press, 2011, pp. 429-459.
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2010

Journal Papers
  • D. Chen, D.R. Chittajallu, G. Passalis, and I.A. Kakadiaris, "Computational tools for quantitative breast morphometry based on 3D scans," Annals of Biomedical Engineering, vol. 38, no. 5, pp. 1703-1718, March 2010.
Conference papers
  • Z. Zheng, T. Fang, S. Shah, and I.A. Kakadiaris, “Personalized 3D-aided 2D facial landmark localization,” in Proc. Asian Conference on Computer Vision, Nov. 8-12 2010, pp. 633 – 646.
  • J. Carson, T. Nguyen, D. Harrington, Y.L. Hai, U. Kurkure, M. Enlow, L. Kindle, I.A. Kakadiaris, and T. Ju, "New tools for multiscale cell-to-organ modeling using deformable 3D atlases," in Proc. Biomedical Engineering Soceity Annual Meeting, Austin, TX, Oct. 6-9 2010.
  • K. Tran, I.A. Kakadiaris, and S.K. Shah, "Fusion of human posture features for continous action recognition," in European Conference on Computer Vision Workshop on Sign, Gesture, and Activity 2010, Crete, Greece, September 5-11 2010.
  • G. Brunner, D.R. Chittajallu, U. Kurkure, and I.A. Kakadiaris, "Patch-cuts: A graph-based image segmentation method using patch features and spatial relations," in 21st British Machine Vision Conference, Aberystwyth, UK, Aug 30 - Sep 2 2010.
  • D.R. Chittajallu, S. Shah, and I.A. Kakadiaris, "A shape-driven MRF model for the segmentation of organs in medical images," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, San Francisco, CA, Jun. 13-18 2010, pp. 3233 - 3240.
  • E. Sgouritsa, A. Mohamed, H. Morsi, H. Shaltoni, M.E. Mawad, and I.A. Kakadiaris, "Neck localization and geometry quantifcation of intracranial aneurysms," in Proc. IEEE International Symposium on Biomedical Imaging, Rotterdam, The Netherlands, Apr. 14-17 2010, pp. 1057 - 1060.
  • R. Yalamanchili, D.R. Chittajallu, P. Balanca, D. Dey, D. Berman, and I.A. Kakadiaris, "Automatic segmentation of the diaphragm in non-contrast CT images," in Proc. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, Apr. 14-17 2010, pp. 900 - 903.
  • R. Yalamanchili, U. Kurkure, D. Dey, D.S. Berman, and I.A. Kakadiaris, “Knowledge-based quantification of pericardial fat in non-contrast CT data,” in Proc. Society of Photographic Instrumentation Engineers Medical Imaging Conference, Feb. 13-18 2010, p. 76231X.
  • A. Mohamed, E. Sgouritsa, H. Morsi, H. Shaltoni, M.E. Mawad, and I.A. Kakadiaris, “Computer-aided planning for endovascular treatment of intracranial aneurysms,” in Proc. Society of Photographic Instrumentation Engineers Medical Imaging Conference, Feb. 13-18 2010.
  • O.C. Avila-Montes, U. Kurkure, and I.A. Kakadiaris, “Aorta segmentation in non-contrast cardiac CT images using an entropy-based cost function,” in Proc. Society of Photographic Instrumentation Engineers Medical Imaging Conference, Feb. 13-18 2010.
Book Chapters
  • I.A. Kakadiaris and S.K. Shah, "Biomedical computing in complex advanced systems," in Pumps and Pipes: Proceedings of the Annual Conference, M.G. Davies, A.B. Lumsden, W.E. Kline, and I.A. Kakadiaris, Eds. Springer, 2010, pp. 177-190.
  • I.A. Kakadiaris, M. Vavuranakis, S.M. O'Malley, R. Metcalfe, C. Hartley, E. Falk, and M. Naghavi, "Vasa vasorum imaging: A new window to the detection of vulnerable atherosclerotic plaques," in Asymptomatic Atherosclerosis: Pathophysiology, Detection and Treatment, M.N. Naghavi, Ed. Humana Press, 2010, pp. 507 - 516.
  • G. Toderici, G. Passalis, T. Theoharis, and I.A. Kakadiaris, "Bidirectional relighting for 3D-aided 2D face recognition," in Multibiometrics for Human Identification, B. Bhanu and V. Govindaraju, Eds. Cambridge University Press, 2010, pp. 258 - 274.
  • D. Dey, I.A. Kakadiaris, A. Wolak, K. Nasir, and D.S. Berman, "Comprehensive non contrast CT imaging of the vulnerable patient," in Asymptomatic Atherosclerosis: Pathophysiology, Detection and Treatment, M.N. Naghavi, D. Berman, M. Budo, E. Falk, Z. Fayad, H. Hecht, K. Nasir, and P.K. Shah, Eds. Humana Press, 2010, pp. 375 - 391.
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2009

Journal Papers
  • I.A. Kakadiaris, E.G. Mendizabal-Ruiz, U. Kurkure, and M. Naghavi, "Challenges and opportunities for extracting cardiovascular risk biomarker from imaging data," in Proc. 14th Iberoamerican Congress on Pattern Recognition, Guadalajara, Mexico, Nov. 15-18 2009.
  • T.G. Papaioannou, M. Vavuranakis, E.A. Sanidas, S. Vaina, I.A. Kakadiaris, M. Naghavi, and C. Stefanadis, "Association of atherosclerotic plaque morphology with neoangiogenesis," in Proc. European Congress of Cardiology, Barcelona, Spain, Aug. 29 - Sep. 2 2009.
Conference Papers
  • B. Efraty, D. Chu, E. Ismailov, S. Shah, and I.A. Kakadiaris, “3D-aided profile-based face recognition,” in Proc. IEEE International Conference on Image Processing, Nov. 7-11 2009, pp. 4125 – 4128.
  • Z. Zeng, T. Fang, S. Shah, and I.A. Kakadiaris, "Local feature hashing for face recognition," in Proc. 3rd IEEE International Conference on Biometrics: Theory, Applications and Systems, Arlington, VA, Sep. 28-30 2009.
  • J. Carson, T. Ju, D. Harrington, Y. Le Hai, G. Brunner, and I.A. Kakadiaris, "A multiscale mouse brain atlas for quantitative comparisons," in Proc. Society for Neuroscience Abstracts, Chicago, IL, Oct. 17-21 2009.
  • P. Viswanath, I.A. Kakadiaris, and S.K. Shah, "A simplified error model for height estimation using a single camers," in Proc. 9th IEEE International Workshop on Visual Surveillance, Kyoto, Japan, Oct. 3 2009.
  • S. Tan and I.A. Kakadiaris, "Kernel active contour," in Proc. 12th IEEE International Conference on Computer Vision, Kyoto, Japan, Sep. 29-Oct. 2 2009.
  • P. Perakis, G. Passalis, T. Theoharis, G. Toderici, and I.A. Kakadiaris, "Partial matching of interpose 3D facial data for face recognition," in Proc. 3rd IEEE International Conference on Biometrics: Theory, Applications and Systems, Arlington, VA, Sep. 28-30 2009. Best-Reviewed Paper from BTAS 2009.
  • M. Vavuranakis, E.A. Sanidas, T.G. Papaioannou, S. Vaina, R. Katsarou, C. Kavouras, I.A. Kakadiaris, M. Naghavi, and C. Stefanadis, "Clinical syndrome and neovascularization in non culprit coronary arterosclerotic plaques," in Proc. Transcatheter Cardiovascular Therapeutics, San Francisco, CA, Sep. 21-25 2009.
  • E.G. Mendizabal-Ruiz, G. Biros, and I.A. Kakadiaris, "An inverse scattering algorithm for the segmentation of the luminal border on intravascular ultrasound data," in Proc. 12th International Conference on Medical Image Computing and Computer Assisted Intervention, London, UK, Sep. 20-24 2009.
  • D.R. Chittajallu, P. Balança, and I.A. Kakadiaris, "Automatic delineation of the inner thoracic region in non-contrast CT data," in Proc. 31st International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, Sep. 2-6 2009.
  • I.A. Kakadiaris, U. Kurkure, E.G. Mendizabal-Ruiz, and M. Naghavi, "Towards cardiovascular risk stratification using imaging data", in Proc. 31st International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, Sep. 2-6 2009.
  • D.R. Chittajallu, G. Brunner, U. Kurkure, R. Yalamanchili, and I.A. Kakadiaris, "Fuzzy-cuts: A knowledge-driven graph-based method for medical image segmentation," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Miami Beach, FL, Jun. 20-25 2009.
  • U. Kurkure, A. Pednekar, R. Muthupillai, S. Flamm, and I.A. Kakadiaris, "Automated localization and segmentation of left ventricle in cardiac cine-MR images", IEEE Transactions on Biomedical Engineering, vol. 56, no. 5, pp. 1360 -- 1370, May 2009.
  • P. Perakis, T. Theoharis, G. Passalis, and I.A. Kakadiaris, "Automatic 3D facial region retrieval from multi-pose facial datasets," in Proc. Eurographics Workshop on 3D Object Retrieval, Munich, Germany, Mar. 30 - Apr. 3 2009, pp. 37 -- 44.
  • T. Fang, G. Toderici, T. Theoharis, and I.A. Kakadiaris, "Gender and ethnicity classification of 3D face models using support vector machines," in Proc. Eurographics Workshop on 3D Object Retrieval, Munich, Germany, Mar. 30 - Apr. 3 2009.
  • D. Dey, B. Tamarappoo, N. Ryo, A. Shah, A. Ramesh, H. Gransar, R. Miranda-Peats, I.A. Kakadiaris, P.J. Slomka, N.D. Wong, and D.S. Berman, "Fast computer-aided CT-based quantitation of pericardial and thoracic fat and their association with coronary calcium," in Proc. 58th Annual Scientific Session of the American College of Cardiology, Orlando, FL, Mar. 28-31 2009.
  • I.A. Kakadiaris, G. Passalis, G. Toderici, T. Perakis, T. Theoharis, "3D-based Face Recognition," in Encyclopedia of Biometrics, S.Z. Li, Ed. Springer, 2009, pp. 329 -- 338.
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2008

Journal Papers
  • M. Vavuranakis, I.A. Kakadiaris, S.M. O'Malley, T.G. Papaioannou, E.A. Sanidas, S. Carlier, M. Naghavi, and C. Stefanadis, "A new method for assessment of plaque vulnerability based on vasa vasorum imaging, by using contrast-enhanced intravascular ultrasound and automated differential image analysis," International Journal of Cardiology, vol. 130, pp. 23 -- 29, Oct. 2008.
  • E.G. Mendizabal-Ruiz, M. Rivera, and I.A. Kakadiaris, "A probabilistic segmentation method for IVUS images," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Anchorage, Alaska, Jun. 24-26 2008.
  • T. Theoharis, G. Passalis, G. Toderici, and I.A. Kakadiaris, "Unified 3D face and ear recognition using wavelets on geometry images" Pattern Recognition, vol. 41, no. 3, pp. 796 -- 804, 2008.
  • M.P. Ostrom, A. Gopal, N. Ahmadi, K. Nasir, E. Yang, I.A. Kakadiaris, F. Flores, S.S. Mao, and M.J. Budoff, "Mortality incidence and the severity of coronary atherosclerosis assessed by computed tomography angiography," Journal of the American College of Cardiology, vol. 52, no. 16, pp. 1335 – 1343, 2008.
  • E.A. Sanidas, M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S. Carlier, G. Syros, G. Dangas, and C. Stefanadis, "Study of atheromatous plaque using intravascular ultrasound," Hellenic Journal of Cardiology, vol. 49, pp. 415 – 421, 2008.
  • B.E. Losavio, Y. Liang, A. Santamaria-Pang, I.A. Kakadiaris, C.M. Colbert, and P. Saggau, "Live neuron morphology automatically reconstructed from multiphoton and confocal imaging data," Journal of Neurophysiology, vol. 100, pp. 2422 -- 2429, 2008.
  • I.A. Kakadiaris, A. Santamaria-Pang, C. Colbert, and P. Saggau, "Automatic 3-D morphological reconstruction of living neurons" in Microscopic Image Analysis for Life Science Applications, J. Rittscher, R. Machiraju, and S.T.C. Wong, Eds. Artech House, Incorporated, 2008, pp. 389 -- 399.
  •  
Conference Paper
  • I.A. Kakadiaris, U. Kurkure, G. Mendizabal, and M. Naghavi, "Cardiovascular informatics," in Proc. 8th International Conference on BioInformatics and BioEngineering, Athens, Greece, Oct. 8-10 2008.
  • I.A. Kakadiaris, H.A.E. Abdelmunim, W. Yang, and T. Theoharis, “Profile-based face recognition,” in Proc. International Conference on Automatic Face and Gesture Recognition, Sep. 17-19 2008.
  • U. Kurkure, D.R. Chittajallu, G. Brunner, R. Yalamanchili, and I.A. Kakadiaris, “Detection of coronary calcifications using supervised hierarchical classification,” in Proc. MICCAI Workshop on Computer Vision for Intravascular and Intracardiac Imaging, Sep. 10 2008, pp. 45 – 52.
  • G. Brunner, D.R. Chittajallu, U. Kurkure, and I.A. Kakadiaris, “A heart-centered coordinate system for the detection of coronary artery zones in non-contrast computed tomography data,” in Proc. MICCAI Workshop on Computer Vision for Intravascular and Intracardiac Imaging, Sep. 10 2008.
  • E.G. Mendizabal-Ruiz and I.A. Kakadiaris, “One-class acoustic characterization applied to contrast agent detection in IVUS,” in Proc. MICCAI Workshop on Computer Vision for Intravascular and Intracardiac Imaging, Sep. 10 2008, pp. 202 – 209.
  • G. Brunner, U. Kurkure, D.R. Chittajallu, R. PC. Yalamanchili, and I.A. Kakadiaris, "Toward unsupervised classifcation of calcified arterial leisons," in Proc. 11th International Conference on Medical Image Computing and Computer Assisted Intervention, New York, NY, Sep. 6-9, 2008, pp. 144 -- 152.
  • E.G. Mendizabal-Ruiz, M. Rivera, and I.A. Kakadiaris, “A probabilistic segmentation method for the identification of luminal borders in intravascular ultrasound images,” in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Jun. 24-26 2008, pp. 1 – 8.
  • U. Kurkure, O.C. Avila-Montes, and I.A. Kakadiaris, "Automated segmentation of thoracic aorta in non-contrast CT images," in Proc. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
  • G. Unal, G. Slabaugh, I.A. Kakadiaris, and A. Tanenbaum, "Guest editorial introduction to the special issue on computer vision for intravascular and intracardiac imaging," IEEE Transactions on Informaton Technology in Biomedicine, vol. 12, no. 3, pp. 273 -- 276, May 2008.
  • S. Tan, L. Jiao, and I.A. Kakadiaris, "Wavelet-based bayesian image estimation: From marginal and bivariate prior models to multivariate prior models," IEEE Transactions on Image Processing, vol. 17, no. 4, pp. 479 -- 481, 2008.
  • S.M. O'Malley, J. Granada, S.G. Carlier, M. Naghavi, and I.A. Kakadiaris, "Image-based gating of intravascular ultrasound pullback sequences," IEEE Transactions on Information Technology in Biomedicine, vol. 12, no. 3, pp. 299 -- 306, 2008
  • A. Santamaria-Pang, T.S. Bildea, S. Tan, and I.A. Kakadiaris, "Denoising for 3-D photon-limited imaging data using nonseparable filterbanks," IEEE Transactions on Image Processing, vol. 17, no. 12, pp. 2312 -- 2323, 2008.

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2007

Journal Papers 
  • M. Vavuranakis, I.A. Kakadiaris, S.M. O’Malley, T.G. Papaioannou, S. Carlier, M. Naghavi, and C. Stefanadis, “Contrast-enhanced intravascular ultrasound: combining morphology with activity-based assessment of plaque vulnerability,” Expert Review of Cardiovascular Therapy, vol. 5, no. 5, pp. 917 – 925, 2007.
  • M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O’Malley, M. Naghavi, K. Filis, E. Sanidas, A. Papalois, I. Stamatopoulos, and C. Stefanadis, “Detection of perivascular blood flow in vivo by contrast-enhanced intracoronary ultrasonography and image analysis: An animal study,” Clinical and Experimental Pharmacology and Physiology, vol. 34, no. 12, pp. 1319 – 1323, 2007.
  • M. Bello, T. Ju, J. Carson, J. Warren, W. Chiu, and I.A. Kakadiaris, “Learning-based segmentation framework for tissue images containing gene expression data,” IEEE Transactions on Medical Imaging, vol. 26, no. 5, pp. 728 – 744, 2007.
  • I.A. Kakadiaris, G. Passalis, G. Toderici, N. Murtuza, Y. Lu, N. Karampatziakis, and T. Theoharis, “Threedimensional face recognition in the presence of facial expressions: An annotated deformable model approach,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 29, no. 4, pp. 640 – 649, 2007.
  • G. Passalis, I.A. Kakadiaris, and T. Theoharis, “Intraclass retrieval of nonrigid 3D objects: Application to face recognition,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 29, no. 2, pp. 218 – 229, 2007.
  • G. Passalis, T. Theoharis, G. Toderici, and I.A. Kakadiaris, “General voxelization algorithm with scalable GPU implementation,” Journal of Graphics Tools, vol. 12, no. 1, pp. 61 – 71, 2007.
Conference Papers
  • I.A. Kakadiaris, G. Passalis, G. Toderici, N. Murtuza, and T. Theoharis. "Quo Vadis, 3D face and ear recognition?" in Face Biometrics for Personal Identification, R.I. Hammoud, B. Abidi, and M. Abidi, Eds. Springer, 2007, pp. 139 -- 164.
  • A. Santamaria-Pang, C.M. Colbert, P. Saggau, and I.A. Kakadiaris, "Automatic centerline extraction of irregular tubular structures using probability volumes from confocal imaging," in Proc. Medical Image Computing and Computer-Assisted Intervention, Brisbane, Australia, Oct. 29 - Nov. 2, 2007.
  • S.M. O'Malley, M. Naghavi, and I.A. Kakadiaris, "One-class acoustic characterization applied to blood detection in IVUS," in Proc. Medical Image Computing and Computer Assisted Intervention, Brisbane, Australia, Oct. 29 - Nov. 2, 2007.
  • A. Santamaria-Pang, C.M. Colbert, B. Losavio, P. Saggau, and I.A. Kakadiaris, "Automatic morphological reconstruction of neurons from optical images," in Proc. Second International Workshop in Microscopic Image Analysis with Applications in Biology, Piscataway, NJ, Sep. 21, 2007.
  • G. Toderici, G. Passalis, T. Theoharis, and I.A. Kakadiaris, "An automated method for human face modeling and relighting with application to face recognition," in Proc. Workshop of Photometric Analysis for computer Vision, Rio de Janeiro, Brazil, Oct. 14 2007.
  • G. Passalis, I.A. Kakadiaris, T. Theoharis, G. Toderici, and T. Papaioannou, "Towards fast 3D ear recognition for real-life biometric applications," in Proc. IEEE Advanced Video and Signal based Surveillance, London, United Kingdom, Sep. 5-7 2007, pp. 39 -- 44.
  • M. Vavuranakis, A. Androulakis, K. Filis, I.A. Kakadiaris, I. Vlasseros, G. Lazaros, M. Naghavi, I. Kallikazaros, and C. Stefanadis, "Contrast enhanced harmonic imaging for the assessment of carotid plaque neovascularization," in Proc. European Society of Cardiology Congress, vol. 28, no. AS, Vienna, Austria, Sep. 1-5 2007, p. 237.
  • M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O'Malley, E.A. Sanidas, M. Naghavi, A. Synetos, M. Riga, and C. Stefanadis, "Is it feasible to image coronary plaque neovascularization in-vivo? Recent data from computational analysis of contrast enhanced IVUS sequences," in Proc. European Society of Cardiology Congress, Vienna, Austria, Sep. 1-5 2007.
  • S.M. O'Malley, S.G. Carlier, M. Naghavi, and I.A. Kakadiaris, "Image-based frame gating of IVUS pullbacks: A surrogate for ECG," in Proc. IEEE Intl. Conference on Acoustics, Speech, and Signal Processing, vol. 1, Honolulu, Hawaii, Apr. 15-20 2007, pp. 1-443 -- 1-436.
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2006

Journal Papers
  • I.A. Kakadiaris, S.M. O’Malley, M. Vavuranakis, S. Carlier, R. Metcalfe, C. Hartley, E. Falk, and M. Naghavi, “Signal processing approaches to risk assessment in coronary artery disease,” IEEE Signal Processing Magazine, vol. 23, no. 6, pp. 59 – 62, 2006.
  • G. Passalis, T. Theoharis, and I.A. Kakadiaris, “PTK: A novel depth-buffer based shape descriptor for threedimensional object retrieval,” Visual Computer, vol. 23, no. 1, pp. 5 – 14, 2006.
  • A.S. Pednekar and I.A. Kakadiaris, “Image segmentation based on fuzzy connectedness using dynamic weights,” IEEE Transactions on Image Processing, vol. 15, no. 6, pp. 1555 – 1562, 2006.
  • A.S. Pednekar, U. Kurkure, R. Muthupillai, S. Flamm, and I.A. Kakadiaris, “Automated left ventricular segmentation in cardiac MRI,” IEEE Transactions on Biomedical Engineering, vol. 53, no. 7, pp. 1425 – 1428, 2006.
  • L. Shen, M. Papadakis, I.A. Kakadiaris, I. Konstantinidis, D.J. Kouri, and D.K. Hoffman, “Image denoising using a tight frame,” IEEE Transactions on Image Processing, vol. 15, no. 5, pp. 1254 – 1263, 2006.
  • T. Ju, J. Warren, J. Carson, M. Bello, I.A. Kakadiaris, W. Chiu, C. Thaller, and G. Eichele, “3D volume reconstruction of a mouse brain from histological sections using warp filtering,” Journal of Neuroscience Methods, vol. 156, pp. 84 – 110, 2006.
  • A.S. Pednekar, R. Muthupillai, V.V. Lenke, I.A. Kakadiaris, and S. Flamm, “Automatic identification of the left ventricle in cardiac cine-MR images: Dual-contrast cluster analysis and scout-geometry approaches,” Journal of Magnetic Resonance Imaging, vol. 23, no. 5, pp. 641 – 651, 2006.
  • J.A. Velazquez-Muriel, M. Valle, A. Santamaria-Pang, I.A. Kakadiaris, and J.-M. Carazo, “Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies,” Structure, vol. 14, no. 7, pp. 1115 – 1126, 2006.
Conference Papers 
  • I.A. Kakadiaris and C. Barron, "Model-based human motion capture," in Handbook of Mathematical Models in Computer Vision, N. Paragios, Y. Chen, and O. Faugeras, Eds. Springer, 2006, pp. 325 -- 341.
  • M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O'Malley, E.A. Sanidas, A. Synetos, K. Filis, M. Naghavi, S. Carlier, and C. Stefanadis, "A new method for quantification of vasa vasorum density within the coronary arterial wall using contrast enhanced intravascular ultrasonography and computational image analysis," in Proc. 2nd Hellenic Congress of Atherosclerosis, Athens, Greece, Nov. 29 - Dec. 2, 2006.
  • M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O'Malley, E.A. Sanidas, A. Synetos, K. Filis, M. Naghavi, S. Carlier, and C. Stefanadis, "A new technique for the assessment of coronary plaque vulnerability using intravascular ultrasound, injection of microbubbles and computational image analysis," in Proc. 5th Annual International Congress of Cardiology, Athens, Greece, Nov. 16-18, 2006.
  • S.M. O'Malley, M. Naghavi and I.A. Kakadiaris, "Image-based frame gating for stationary-catheter IVUS sequences," in Proc. Intl. Workshop on Computer Vision for Intravascular and Intracardiac Imaging, Copenhagen, Denmark, Oct. 6 2006, pp. 14 -- 21.
  • A. Santamaria-Pang, T.S. Bildea, C. Colbert, P. Saggau, and I.A. Kakadiaris, "Towards segmentation of irregular tubular structures in 3D confocal microscope images", in Proc. MICCAI Workshop in Microscopic Image Analysis and Applications in Biology (MIAAB), Copenhagen, Denmark, Oct. 1-6, 2006.
  • M. Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O'Malley, E. Sanidas, M. Naghavi, S. Carlier, and C. Stefanadis, "A novel method for in-vivo imaging of vasa vasorum in coronary atherosclerotic plaques using intravascular ultrasound, injection of microbubbles and a differential imaging algorithm," in Proc. 3rd International Greek Biotechnology Forum, Athens, Greece, Oct. 5-7, 2006.
  • I.A. Kakadiaris, G. Passalis, G. Toderici, N. Murtuza, and T. Theoharis, "3D face recognition," in Proc. British Machine Vision Conference, Edinburgh, United Kingdom, Sep. 4-7 2006, pp. 200 -- 208.
  • M. Vavuranakis, T.G. Papaioannou, M. Naghavi, I.A. Kakadiaris, S.M. O'Malley, E. Sanidas, A. Papalois, and C. Stefanadis, "Coronary perivascular flow imaging with intracoronary ultrasound catheter and intracoronary injections of ultrasound contrast agent," in Proc. World Congress of Cardiology - European Heart Journal, Barcelona, Spain, Sep. 6-9 2006, p. 668.
  • M . Vavuranakis, T.G. Papaioannou, I.A. Kakadiaris, S.M. O'Malley, E. Sanidas, M. Naghavi, S. Carlier, and C. Stefanadis, "Quantification of vasa vasorum density within intima-media of coronary arterial wall using contrast enhanced intravascular ultrasound with microbubbles and differential imaging algorithm," in Proc. World Congress of Cardiology - European Heart Journal, Barcelona, Spain, Sep. 6-9 2006, p. 698.
  • A.N. Bandekar, M. Naghavi, and I.A. Kakadiaris, "Automated pericardial fat quantification in CT data," in Proc. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, New York, NY, Aug. 30 - Sep. 3 2006, pp. 932 -- 936.
  • B.E. Losavio, G.D. Reddy, C.M. Colbert, I.A. Kakadiaris, and P. Saggau, "Combining optical imaging and computational modeling to analyze structure and function of living neurons," in Proc. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, New York, NY, Aug. 30 - Sep. 3, 2006, pp. 668 -- 670.
  • S. Urban, S.M. O'Malley, B. Walsh, A. Santamaria-Pang, P. Saggau, C. Colbert, and I.A. Kakadiaris, "Automatic reconstruction of dendrite morphology from optical section stacks," in Proc. 2nd International Workshop on Computer Vision Approaches to Medical Image Analysis, Graz, Austria, May 7-13 2006, pp. 190 -- 201.
  • A. Santamaria-Pang, T.S. Bildea, I. Konstantinidis, and I.A. Kakadiaris, "Adaptive frames-based denoising of confocal microscopy data," in Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing, vol. 2, Toulouse, France, May 14-19 2006, p. II.
  • I.A. Kakadiaris, G. Passalis, G. Toderici, Y. Lu, N. Karampatziakis, N. Murtuza, and T. Theoharis, "Expression-invariant multispectral face recognition: you can smile now!" in Proc. Biometric Technology for Human Identification III, Defense and Security Symposium, vol. 6202, Apr. 2006, pp. 620 204.1 -- 620 204.7.
  • S.M. O'Malley, M. Vavuranakis, R. Metcalfe, C.J. Hartley, M. Naghavi, and I.A. Kakadiaris, "Intravascular ultrasound-based imaging of vasa vasorum for the detection of vulnerable atherosclerotic plaque," in Proc. Houston Society for Engineering in Medicine and Biology (HSEMB), Houston, TX, Feb. 2006.
  • I.A. Kakadiaris, S.M. O'Malley, M. Vavuranakis, S. Carlier, C. Hartley, R. Metcalfe, R. Mehran, and M. Naghavi, "Intravascular ultrasound-based imaging of vasa vasorum for the detection of vulnerable atherosclerotic plaque," in Proc. Journal of the American College of Cardiology, vol. 47, no. 4, Feb. 2006, p. 264A.
  • I.A. Kakadiaris, A. Bandekar, K. Gul, S.S. Mao, J. Takasu, M. Budoff, and M. Naghavi, "Automated pericardial fat quantification in CT data," in Proc. Journal of the American College of Cardiology, vol. 47, no. 4, Feb. 2006, p. 264A.
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2005

Journal Papers
  • M. Vavuranakis, I.A. Kakadiaris, S.M. O’Malley, C. Stephanadis, S. Vaina, M. Drakopoulou, I. Mitropoulos, S. Carlier, and M. Naghavi, “Detection of luminal-intima border and coronary wall enhancement in intravascular ultrasound imaging after injection of microbubbles and simultaneous sonication with transthoracic echocardiography,” Circulation, vol. 112, no. 1, pp. e1 – e2, 2005.
  • S. Carlier, I.A. Kakadiaris, N. Dib, M. Vavuranakis, C. Stephanadis, S.M. O’Malley, C. Hartley, R. Metcalfe, R. Mehran, E. Falk, K. Gul, and M. Naghavi, “Vasa vasorum imaging: a new window to the clinical detection of vulnerable atherosclerotic plaques,” Current Atherosclerosis Reports, vol. 7, no. 2, pp. 164 – 169, 2005.
  • T. Ju, J. Warren, J. Carson, G. Eichele, C. Thaller, W. Chiu, M. Bello, and I.A. Kakadiaris, “Building 3D surface networks from 2D curve networks with application to anatomical modeling,” Visual Computer, vol. 21, no. 8 – 10, pp. 764 – 773, 2005.
Conference Papers
  • M. Bello, T. Ju, J. Warren, J. Carson, W. Chiu, C. Thaller, G. Eichele, and I.A. Kakadiaris, "Hybrid segmentation framework for tissue images containing gene expression data," in Proc. 8th International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, Oct. 26-29 2005, pp. 254 -- 261.
  • S.M. O'Malley, M. Naghavi, and I.A. Kakadiaris, "Intravascular ultrasound-based detection and quantification of vasa vasorum," in Proc. 8th International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, Oct. 26-29 2005, pp. 343 -- 351.
  • S.G. Carlier, I.A. Kakadiaris, N. Dib, M. Vavuranakis, C.J. Hartley, R. Metcalfe, R.Mehran, and M. Naghavi, "Vasa vasorum imaging of coronary plaques with intravascular ultrasound and microbubbles," in Proc. European Society of Cardiology Congress, Stockholm, Sweden, Sep. 3-7 2005.
  • I. Konstantinidis, A. Santamaria-Pang, and I.A. Kakadiaris, "Frames-based denoising in 3D confocal microscopy imaging," in Proc. 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, China, Sep. 1-4, 2005, pp. 290 -- 293.
  • A.N. Bandekar, M. Naghavi, and I.A. Kakadiaris, "Performance evaluation of abdominal fat burden quantification in CT," in Proc. 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, China, Sep. 1-4, 2005, pp. 3280 -- 3283.
  • I.A. Kakadiaris, I. Konstantinidis, M. Papadakis and W. Ding, "Parametric surface denoising", in Proc. SPIE Wavelets XI, M. Papadakis, A. Laine, M. Unser, Eds., San Diego, CA, Jul. 31 - Aug. 4 2005.
  • P. Katsaloulis, P. Simos, D. Francis, A. Papanicolaou, I.A. Kakadiaris, and T. Theoharis, "3D Visualization of MEG activation records within a semi-transparent talairach model brain," in Proc. 1st International Conference on Geometric Modeling, Visualization & Graphics, Salt Lake City, Utah, Jul. 21-26, 2005.
  • J. Carson, T. Ju, H. Lu, C. Thaller, M. Bello, I.A. Kakadiaris, G. Eichele, J. Warren, and W. Chiu, "Data mining in situ gene expression patterns at cellular resolution", in Proc. 13th Annual International Conference on Intelligent Systems for Molecular Biology, Detroit, MI, Jun. 25-29, 2005.
  • I.A. Kakadiaris, G. Passalis, T. Theoharis, G. Toderici, I. Konstantinidis, and N. Murtuza, "Multimodal face recognition: combination of geometry with physiological information, in Proc. IEEE Computer Vision and Pattern Recognition Conference, San Diego, CA, Jun. 20-25, 2005, pp. 1022 -- 1029.
  • I.A. Kakadiaris, G. Passalis, T. Theoharis, G. Toderici, I. Konstantinidis, and N. Murtuza, "8D-THERMO CAM: Combination of geometry with physiological information for face recognition," in Video Proc. Computer Vision and Pattern Recognition Conference, San Diego, CA, Jun. 20-25, 2005, p. 1183.
  • G. Passalis, I.A. Kakadiaris, T. Theoharis, G. Toderici, and N. Murtuza, "Evaluation of 3D face recognition in the presence of facial expressions: an annotated deformable model approach," in Proc. IEEE Workshop on Face Recognition Grand Challenge Experiments, vol. 3, San Diego, CA, Jun. 20-25 2005, p. 171.
  • L. Shen, M. Papadakis, I.A. Kakadiaris, I. Konstantinidis, D.J. Kouri, and D.K. Hoffman, "Image denoising using a tight frame," in Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing, vol. II, Philadelphia, PA, Mar. 18-23 2005, pp. 641 -- 644.
  • M. Bello, T. Ju, J.Warren, J. Carson, W. Chiu, C. Thaller, G. Eichele, and I.A. Kakadiaris, "Statistical shape and texture segmentation of anatomical regions for mouse brain gene expression data," in Proc. 22nd Annual Houston Conference on Biomedical Engineering Research, Houston, TX, Feb. 10-11, 2005.
  • A.S. Pednekar, A.N. Bandekar, I.A. Kakadiaris, and M. Naghavi, "Automatic segmentation of abdominal fat in CT," in Proc. IEEE Workshop on Applications of Computer Vision, Breckenridge, CO, Jan. 5-7, 2005, pp. 308 -- 316.
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2004

Journal Papers
  • C. Barron and I.A. Kakadiaris, “Monocular human motion tracking,” ACM Multimedia Systems, vol. 10, no. 2, pp. 118 – 130, 2004.
  • J. Yang, L. Shen, M. Papadakis, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, “Orthonormal wavelets arising from HDAFs,” Contemporary Mathematics, AMS, vol. 345, pp. 317 – 342, 2004.
Conference Papers
  • L. Shen, J. Yang, M. Papadakis, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, "Orthonormal wavelets arising from HDAFs," Contemporary Mathematics, AMS, vol. 345, pp. 317 -- 342, 2004.
  • S. Urban, S. O'Malley, B. Walsh, B. Losavio, T. Hoogland, P. Saggau, C. Colbert, and I.A. Kakadiaris, "Automatic reconstruction of dendrite morphologies from confocal images," in Proc. Texas Systems Day, Houston, TX, Nov. 13 2004, p. 25.
  • N. Vajramushti, I.A. Kakadiaris, T. Theoharis and G. Papaioannou, "Efficient 3D object retrieval using depth images," in Proc. 6th ACM SIGMM International Workshop on Multimedia Information Retrieval, New York, NY, October 15-16, 2004, pp. 189 -- 196.
  • M. Sonka, I.A. Kakadiaris, and J. Kubic, Eds., Proc. Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, Prague, Czech Republic, May 2004.
  • A.S. Pednekar, U. Kurkure, I.A. Kakadiaris, R. Muthupillai and S.D. Flamm, "Left ventricular segmentation in MR using hierarchical multi-class multi-feature fuzzy connectedness," in Proc. 7th International Conference on Medical Image Computing and Computer Assisted Intervention, Rennes, Saint-Malo, France, Sep. 26-30, 2004, pp. 402 -- 410.
  • I.A. Kakadiaris, M. Bello, S. Arunachalam, W. Kang, T. Ju, J. Warren, J. Carson, W. Chiu, C. Thaller, and G. Eichele, "Landmark-driven, atlas-based segmentation of mouse brain tissue slices containing gene expression data," in Proc. 7th International Conference on Medical Image Computing and Computer Assisted Intervention, Rennes, Saint-Malo, France, Sep. 26-30 2004, pp. 192-199.
  • I.A. Kakadiaris, A.S. Pednekar and A. Santamaria-Pang, "Three-dimensional shape-motion analysis of the left anterior descending coronary artery in EBCT images, in Proc. 7th International Conference on Medical Image Computing and Computer Assisted Intervention, Rennes, Saint-Malo, France, Sep. 26-30, 2004, pp. 1025 -- 1033.
  • J. Carson, T. Ju, C. Thaller, J. Warren, M. Bello, I.A. Kakadiaris, W. Chiu and G. Eichelle, "Automated characterization of gene expression patterns with an atlas of the mouse brain," in Proc. 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, vol. 2, San Francisco, CA, Sep. 1-5 2004, pp. 2917 -- 2920.
  • G. Toderici, A. Esquival, H.K. Li and I.A. Kakadiaris, "Evaluation of variability and significance of fundus camera lens distortion," in Proc. 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Francisco, CA, Sep. 1-5 2004, pp. 982.
  • C. Uehara, C.M. Colbert, P. Saggau and I.A. Kakadiaris, "Towards automatic reconstruction of dendrite morphology from live neurons," in Proc. 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, vol. 3, San Fransisco, CA, Sep. 1-5, 2004, pp. 1798 -- 1801.
  • P. Buddharaju, I. Pavlidis and I.A. Kakadiaris, "Face recognition in the infrared spectrum," in Proc. Joint IEEE International Workshop on Object Tracking and Classification Beyond the Visible Spectrum, Washington, DC, Jul. 2, 2004.
  • S. O'Malley and I.A. Kakadiaris, "Towards robust structure-based enhancement and horizon picking in 3-D Seismic Data," in Proc. Computer Vision and Pattern Recognition Conference, Washington, DC, Jun. 27 - Jul. 2, 2004, pp. 482 -- 489.
  • I.A. Kakadiaris, L. Shen, M. Papadakis, I. Konstantinidis, D.J. Kouri and D.K. Hoffman, "Surface denoising using a tight frame," in Proc. Computer Graphics International, Crete, Greece, Jun. 16-19, 2004, pp. 553 -- 560.
  • G. Passalis, I.A. Kakadiaris and T. Theoharis, "Efficient hardware voxelization," in Proc. Computer Graphics International, Crete, Greece, Jun. 16-19, 2004, pp. 374 -- 377.
  • H.K. Li, G. Toderici, A. Esquival, and I.A. Kakadiaris, "Computer display calibration guidelines for digital imagery diabetic retinopathy evaluation," in Proc. 9th Annual Meeting and Exposition of the American Telemedicine Association, Tampa, FL, May 2 2004.
  • G. Toderici, A. Esquival, Z. Krason, J. Horna, I.A. Kakadiaris and H.K. Li, "Evaluation of variability and significance of fundus camera lens distortion in computer-based analysis of digital imagery," in Proc. Association for Research in Vision and Ophthalmology, Ft. Lauderdale, FL, Apr. 25-29, 2004, p. 246.
  • P. Buddharaju, I. Pavlidis and I.A. Kakadiaris, "Face recognition in the infrared spectrum," in Proc. 21st Annual Houston Conference on Biomedical Engineering Research, Houston, TX, Feb. 12-13, 2004, p. 147.
  • A.S. Pednekar, U. Kurkure, R. Muthupillai, S.D. Flamm, and I.A. Kakadiaris, "Automatic myocardial segmentation using short axis cine-bFFE MR images," in Proc. 21st Houston Conference on Biomedical Engineering Research, Houston, TX, Feb. 12-13, 2004, p. 77.
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2003

Journal Papers 
  • D.J. Kouri, M. Papadakis, I.A. Kakadiaris, and D.K. Hoffman, “Properties of minimum uncertainty wavelets and their relations to the harmonic oscillator and the coherent states,” Journal of Physical Chemistry A, vol. 107, no. 37, pp. 7318 – 7327, 2003.
  • M. Papadakis, G. Gogoshin, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, “Non-separable radial frame multiresolution analysis in multidimensions,” Numerical Functional Analysis and Optimization, vol. 24, pp. 907 – 928, 2003.
  • L. Shen, J. Yang, M. Papadakis, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, “On the smoothness of orthonormal wavelets arising from HDAFs,” Applied and Computational Harmonic Analysis, vol. 15, no. 3, pp. 242 – 254, 2003.
  • C. Barron and I.A. Kakadiaris, “On the improvement of anthropometry and pose estimation from a single uncalibrated image,” Machine Vision and Applications - Special Issue on Human Modeling, Analysis and Synthesis, vol. 14, no. 4, pp. 229 – 236, Sep. 2003.
Conference Papers 
  • A.S. Pednekar, I.A. Kakadiaris, U. Kurkure, R. Muthupillai and S.D. Flamm, "Validation of automatic computation of ejection fraction," in Proc. 6th Medical Image Computing and Computer-Assisted Intervention, Toronto, Canada, Nov. 14-17, 2003, pp. 987-989.
  • C. Barron and I.A. Kakadiaris, "A convex penalty method for optical human motion tracking," in Proc. ACM International Workshop on Video Surveillance, Berkeley, CA, Nov. 7 2003, pp. 53 -- 60.
  • C. Williams, I.A. Kakadiaris, K. Ravi-Chandar, M. Miller and C. Patrick, "Simulation studies for predicting surgical outcomes in breast reconstructive surgery," in Proc. Medical Image Computing and Computer-Assisted Intervention, Toronto, Canada, Nov. 2-4, 2003, pp. 9 -- 16.
  • A.S. Pednekar, I.A. Kakadiaris, U. Kurkure, R. Muthupillai and S.D. Flamm, "Intensity and morphology-based energy minimization for the automatic segmentation of the myocardium," in Proc. 2nd IEEE Workshop on Variational, Geometric and Level Set Methods in Computer Vision, Acropolis, Nice, France, Oct. 11-12 2003, pp. 185 -- 192.
  • G. Passalis, T. Theoharis, M. Miller and I.A. Kakadiaris, "Non-invasive automatic breast volume estimation for post-mastectomy breast reconstructive surgery," in Proc. 25th Annual International Conference of the IEEE Engineering In Medicine And Biology Society, Cancun, Mexico, Sep. 17-20, 2003, pp. 1319 -- 1322.
  • I.A. Kakadiaris, R. Sharma, and M. Yeasin, "Guest editorial introduction to the special issue on human modeling, analysis, and synthesis," Machine Vision and Applications - Special Issue on Human Modeling, Analysis and Synthesis, vol. 14, no. 4, pp. 197-198, Sep. 2003.
  • K. Andersson, I.A. Kakadiaris, M. Papadakis, D.J. Kouri and D.K. Hoffman, "Analysis of HDAFs for volume rendering," in Proc. Joint Eurographics - IEEE TCVG Symposium on Visualization, Grenoble, France, May 26-28, 2003, pp. 95 -- 104.
  • A.S. Pednekar, I.A. Kakadiaris, R. Muthupillai and S.D. Flamm, "Automatic myocardial segmentation using dual-contrast short axis cardiac MR images," in Proc. 20th Houston Conference on Biomedical Engineering Research, Houston, TX, Apr. 3-4, 2003, p. 77.
  • C. Williams, I.A. Kakadiaris, K. Ravi-Chandar, M. Miller and C. Patric, "Simulation study for modeling the reconstructed breast," in Proc. 20th Annual Meeting of the Houston Society of Engineering in Medicine and Biology, Houston, TX, Apr. 3-4, 2003.
  • H. Asada, I.A. Kakadiaris, C. Tomasi, and M. Zefran, Eds., Proc. Robotics and Computer Vision Workshop, Las Vegas, NV, 2003.
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2002

Journal Papers 
  • C. Harding, I.A. Kakadiaris, J. Casey, and R.B. Loftin, “A multi-sensory system for the investigation of geoscientific data,” Computers and Graphics, Special Issue on Data Visualization, vol. 26, pp. 259 – 269, 2002.
  • D. Metaxas and I.A. Kakadiaris, “Elastically adaptive deformable models,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 24, no. 10, pp. 1310 – 1321, 2002.
Conference Papers 
  • A.S. Pednekar, I.A. Kakadiaris and U. Kurkure, "Adaptive fuzzy connectedness-based medical image segmentation," in Proc. Indian Conference on Computer Vision, Graphics, and Image Processing, Ahmedabad, India, Dec. 16-18, 2002, pp. 457-462.
  • C. Uehara and I.A. Kakadiaris, "Towards automatic analysis of DNA microarrays, in Proc. 6th IEEE Workshop on Applications of Computer Vision, Orlando, FL, Dec. 3-4, 2002, pp. 57-62.
  • I.A. Kakadiaris, "Data interrogation in visual computing, in Proc. XI International Conference on Computing, Mexico City, Mexico, Nov. 24-29, 2002.
  • A.S. Pednekar, I.A. Kakadiaris, R. Muthupillai and S.D. Flamm, "Automatic segmentation of the left ventricle from dual contrast cardiac MR data," in Proc. 4th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Houston, TX, Oct. 23-26, 2002, pp. 991 -- 992.
  • A.S. Pednekar, I.A. Kakadiaris, V. Zavaletta, R. Muthupillai and S.D. Flamm, "Automatic hybrid segmentation of dual contrast cardiac MR data," in Proc. 5th Medical Image Computing and Computer-Assisted Intervention, Tokyo, Japan, Sep. 25-28, 2002, pp. 690 -- 697.
  • A.S. Pednekar, I.A. Kakadiaris, R. Muthupillai and S.D. Flamm, "Knowledge-guided automatic segmentation of the left ventricle from MR," in Proc. 29th Annual Conference of Computers in Cardiology, Memphis, TN, Sep. 22-25, 2002, pp. 193 -- 196.
  • G. Martinez, I.A. Kakadiaris and D. Magruder, "Teleoperating ROBONAUT: a case study," in Proc. British Machine Vision Conference, Cardiff, UK, Sep. 2-5, 2002, pp.757 -- 766.
  • I.A. Kakadiaris, L. Shen, M. Papadakis, D.J. Kouri and D.K. Hoffman, "g-HDAF multiresolution deformable models for shape modeling and reconstruction," in Proc. British Machine Vision Conference, Cardiff, UK, Sep. 2-5, 2002, pp. 303 -- 312.
  • C. Uehara, A.H. Spexet, and I.A. Kakadiaris, "Adaptive wavelet thresholding for denoising DNA microarrays," in Proc. 224th American Chemical Society National Meeting, Boston, MA, Aug. 18-22 2002.
  • I.A. Kakadiaris, M. Papadakis, L. Shen, D.J. Kouri and D.K. Hoffman, "m-HDAF multiresolution deformable models," in Proc. 14th International Conference on Digital Signal Processing, Santorini, Greece, Jul. 1-3, 2002, pp. 505 -- 508.
  • A.S. Pednekar, I.A. Kakadiaris, R. Muthupillai and S.D. Flamm, "Automatic computation of the ejection fraction using dual contrast short-axis cardiac MR images, in Proc. 10th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, Honolulu, HI, May 18-24, 2002, p. 2463.
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2001

Journal Papers 
  • G.W. Wei, H. Wang, D.J. Kouri, M. Papadakis, I.A. Kakadiaris, and D.K. Hoffman, “On the mathematical properties of distributed approximating functionals,” Journal of Mathematical Chemistry, vol. 30, no. 1, pp. 83 – 107, 2001.
  • C. Barron and I.A. Kakadiaris, “Estimating anthropometry and pose from a single uncalibrated image,” Computer Vision and Image Understanding, vol. 81, no. 3, pp. 269 – 284, 2001.
Conference Papers 
  • K. Sarh, I.A. Kakadiaris, K. Ravi-Chandar, C. Patrick and M. Miller, "Towards a biomechanical model of the breast: A simulation-based study," in Proc. ASME International Mechanical Engineering Congress and Exposition, vol. 6, New York, NY, Nov. 11-16 2001, pp. 109 -- 130.
  • G. Zouridakis, C. Zakarian, I.A. Kakadiaris and K. Grigoriadis, "Towards predicting LAD motion using endoscopic imaging and ongoing ECG," in Proc. Society for Neuroscience Abstracts, San Diego, CA, Nov. 10-15, 2001.
  • I.A. Kakadiaris, A.S. Pednekar, G. Zouridakis and K. Grigoriadis, "Estimating the motion of the left anterior descending coronary artery: a simulation-based study," in Proc. 4th Medical Image Computing and Computer Assisted Intervention, Utrecht, The Netherlands, Oct. 14-17, 2001, pp. 1328 -- 1331.
  • A. Pandya, M. Siadat, J. Gong, L. Zamorano, J. Maida and I.A. Kakadiaris, "Tracking methods for medical augmented reality," in Proc. 4th Medical Image Computing and Computer-Assisted Intervention, Utrecht, The Netherlands, Oct. 14-17, 2001, pp. 1404 -- 1405.
  • I.A. Kakadiaris, A.S. Pednekar, G. Zouridakis and K. Grigoriadis, "Estimating the motion of the LAD," in Proc. Annual Fall Meeting of the Biomedical Engineering Society, Durham, NC, Oct. 4-7, 2001.
  • I.A. Kakadiaris, K. Sarh, K. Ravi-Chandar, C. Patrick and M. Miller, "A biomechanical model of the female breast," in Proc. Annual Fall Meeting of the Biomedical Engineering Society, Durham, NC, Oct. 4-7, 2001.
  • G. Zouridakis, C. Zakarian, I.A. Kakadiaris and K. Grigoriadis, "Exploring the use of imaging and ongoing ECG for predicting LAD motion," in Proc. Annual Fall Meeting of the Biomedical Engineering Society, Durham, NC, Oct. 4-7, 2001.
  • I.A. Kakadiaris, M. Papadakis, H. Wang, D.J. Kouri, and D.K. Hoffman, "New class of multiresolution deformable models," in Proc. SPIE Wavelets: Applications in Signal and Image Processing IX, M. Unser, A. Aldroubi, A. Laine, Eds., vol. 4478, Jul. 30 - Aug. 1 2001, pp. 631 -- 642.
  • C. Harding, I.A. Kakadiaris, J. Casey and R. Loftin, "A case study in multi-sensory investigation of geoscientific data," in Proc.. Joint Eurographics - IEEE TCVG Symposium on Visualization, Ascona, Switzerland, May 28-30, 2001.
  • L. Zamorano, A. Pandya, M. Siadat, J. Gong, J. Maida, Q. Li and I.A. Kakadiaris, "Augmented reality for tele-operations," in Proc. Bioastronautics Investigators' Workshop, Galveston, TX, Jan. 17-19, 2001, pp. 26 -- 27.
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2000

Journal Papers 
  • I.A. Kakadiaris and D. Metaxas, “Model-based estimation of 3D human motion,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 22, no. 12, pp. 1453 – 1459, 2000.
  • C. Harding, I.A. Kakadiaris, R.B. Loftin, and J. Casey, “Using vision, touch and sound geoscientific investigation,” OffShore Magazine, vol. 60, no. 12, pp. 64 – 66, 2000.
Conference Papers
  • A.S. Pednekar and I.A. Kakadiaris, "Applications of virtual reality in surgery," Proc. Indian Conference on Computer Vision, Graphics, and Image Processing(ICVGIP 2000), Banglore, India, Dec. 20-22, 2000, pp. 215 -- 223.
  • C. Barron and I.A. Kakadiaris, "On the improvement of anthropometry and pose estimation from a single uncalibrated image," in Proc.. IEEE Workshop on Human Motion, Austin, TX, Dec. 7-8, 2000, pp. 53 -- 60.
  • I.A. Kakadiaris, D.T. Chen, M. Miller, B. Loftin and C. Patrick, "Simulation-based determination of breast tissue engineering design parameters," in Proc. Third Biennial Meeting of the Tissue Engineering Society International, Lake Buena Vista, FL, Nov. 30 - Dec. 3, 2000.
  • Z. Wen, I.A. Kakadiaris and C. Eick, "Tissue classification of MR images using decision trees," in Proc. Smart Engineering System Design Conference, St. Louis, MI, Nov. 5-8, 2000, pp. 771 -- 776.
  • C. Lin, B. Loftin, I.A. Kakadiaris, D.T. Chen, and S. Su, "Interaction with medical volume data on a projection workbench," in Proc. 10th International Conference on Artificial Reality and Tele-existance, Taipei, Taiwan, Oct. 25-27, 2000, pp. 148 -- 152.
  • C. Harding, I.A. Kakadiaris and R.B. Loftin, "Multi-sensory data investigation: Adding touch and sound to geoscientific visualization and modeling," in Proc. Gulf Coast Association of Geological Societies Convention, Houston, TX, Oct. 25-27, 2000, pp. 67 -- 72.
  • D.T. Chen, I.A. Kakadiaris, M. Miller, R.B. Loftin, and C. Patrick, "Modeling for plastic and reconstructive breast surgery, in Proc. 3rd Medical Image Computing and Computer Assisted Intervention, Pittsburgh, PA, Oct. 11-14, 2000, pp. 1040 -- 1050.
  • C. Harding, I.A. Kakadiaris and R.B. Loftin, "A multimodal interface for geoscientific data investigation," in Proc. 3rd International Conference on Multimodal Interfaces, Beijing, China, Oct. 14-16, 2000, pp. 615 -- 623.
  • C. Harding, I.A. Kakadiaris, R.B. Loftin and J. Casey, "Multimodal investigation of geoscientific data -- adding touch and sound to 3-D visualization of surface-based data," in Proc. Society of Exploration Geophysists (SEG) / Calgary International Exposition and 70th Annual Meeting, Calgary, Canada, Aug. 6-11, 2000, pp. 685 -- 688.
  • I.A. Kakadiaris, "Towards a visual computing certificate at University of Houston," in Proc. 2nd IEEE CS Workshop on Undergraduate Education & Image Computation, Hilton Head Island, SC, Jun. 16, 2000.
  • C. Barron and I.A. Kakadiaris, "Estimating anthropometry and pose from a single image," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 1, Hilton Head Island, SC, Jun. 13-15, 2000, pp. 669 -- 676.
  • I.A. Kakadiaris and R. Sharma, Eds., Proc. IEEE Human Motion Analysis and Synthesis Workshop, Hilton Head Island, SC, Jun. 2000.
  • A.S. Pednekar and I.A. Kakadiaris, "Modeling, visualization and interaction in surgery simulation," in Proc. 18th Houston Conference on Biomedical Engineering Research, Houston, TX, Feb. 10-12, 2000.
  • V. Zavaletta and I.A. Kakadiaris, "Image-guided therapy: A review," in Proc. 18th Houston Conference on Biomedical Engineering Research, Houston, TX, Feb. 10-12, 2000.
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1999

Conference Papers
  • J.U. Quevedo, I.A. Kakadiaris, Z. Shi and D.J. Kouri, "A new class of approximating wavelets," in Proc. 21st Annual International Conference of the Engineering in Medicine and Biology Society, vol. 2, Atlanta, GA, Oct. 13-16 1999, p. 954.
  • Z. Shi, H. Wang, D.J. Kouri, G.H. Gunaratne, J.U. Quevedo, I.A. Kakadiaris, and D.K. Hoffman, "Perceptual mammogram solution using a class of smooth wavelets," in Proc. 21st Annual International Conference of the Engineering in Medicine and Biology Society, vol. 2, Atlanta, Georgia, Oct. 13-16, 1999, p. 982.
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1998

Journal Papers
  • I.A. Kakadiaris and D. Metaxas, “3D human body model acquisition from multiple views,” International Journal of Computer Vision, vol. 30, no. 3, pp. 191 – 218, 1998.
Conference Papers 
  • I.A. Kakadiaris and D. Metaxas, "Vision-based animation of digital humans," in Proc. Computer Animation Conference, Philadelphia, PA, Jun. 8-10, 1998, pp. 144 -- 152.
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1997

Journal Papers 
  • I.A. Kakadiaris, D. Metaxas and R. Bajcsy, "Inferring 2D object structure from the deformation of apparent contours," Computer Vision and Image Understanding, vol. 65, no. 2, pp. 129 -- 147, 1997.
Conference Papers 
  • I.A. Kakadiaris, "Motion-based part segmentation and tracking," in Physics-Based Deformable Models: Applications to Computer Vision, Graphics and Medical Imaging, D. Metaxas, Ed. Springer, Nov. 1997, pp. 149 -- 189.
  • I.A. Kakadiaris and D. Metaxas, "Passive 3D human motion capture," in Visual Proc. ACM SIGGRAPH, Los Angeles, CA, Aug. 3-8, 1997, p. 223.
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1996

Conference Papers
  • I.A. Kakadiaris and D. Metaxas, "Model-based estimation of 3D human motion with occlusion based on active multi-viewpoint selection," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, San Francisco, CA, Jun. 18-20, 1996, pp. 81 -- 87.
  • D. Metaxas and I.A. Kakadiaris, "Elastically adaptive deformable models," in Proc. 4th Fourth European Conference on Computer Vision (ECCV), vol. 2, Cambridge, England, Apr. 14-18 1996, pp. 550 -- 559.
  • D. Metaxas and I.A. Kakadiaris, ""Smart" deformable models for shape estimation," in Proc. 9th Image and Multidimensional Signal Processing (IMDSP) Workshop, Belize City, Belize, Mar. 3-6, 1996.
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1995

Conference Papers
  • I.A. Kakadiaris and D. Metaxas, "3D human body model acquisition from multiple views," in Proc. International Conference on Computer Vision, Boston, MA, Jun. 20-23, 1995, pp. 618 -- 623.
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1994

Conference Papers 
  • I.A. Kakadiaris, D. Metaxas and R. Bajcsy, "Active motion-based segmentation of human body outlines," in Proc. Workshop on Motion of Non-Rigid and Articulated Objects, Austin, TX, Nov. 11-12, 1994, pp. 50 -- 56.
  • F. Azuola, N.I. Badler, P. Ho, I.A. Kakadiaris, D. Metaxas, and B. Ting, "Building anthropometry-based virtual human models," in Proc. IMAGE VII Society Conference, Tucson, AZ, Jun. 1994.
  • I.A. Kakadiaris, D. Metaxas and R. Bajcsy, "Active part-decomposition, shape and motion estimation of articulated objects: A physics-based approach," in Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Seattle, WA, Jun. 21-23 1994, pp. 980 -- 984.
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1992

Journal Papers 
  • R. Futrelle, I.A. Kakadiaris, J. Alexander, C. Carriero, N. Nikolakis and J. Futrelle, "Understanding diagrams in technical documents," IEEE Computer, vol. 25, no. 7, pp. 75 -- 78, Jul. 1992.
Conference Papers 
  • R. Futrelle and I.A. Kakadiaris, "Diagram understanding using graphics constraint grammars" in Engineering Systems with Intelligence: Concepts, Tools and Applications, Spyros Tzafestas, Ed. Kluwer Academic Publishers, 1992, pp. 73 -- 81.

1991

Conference Papers 
  • R. Futrelle, M. Pescitelli, J. Alexander, M. Cleary, J. Crisman, C. Dunn, D. Ellis, J. Gauch, I.A. Kakadiaris, S. Mukherjea, D. Nadeau, and N. Nikolakis, "Document analysis, understanding and knowledge access," in Proc. International Conference on Document Analysis Recognition, Saint-Malo, France, Sep. 30 - Oct. 2 1991, pp. 101 -- 111.
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