Software List
This page lists the currently installed software packages on the Carya and Sabine clusters.
Software Modules
List of Software on Sabine Cluster:
- ABINIT
- ABySS
- AFNI
- AlphaFold
- AlphaPulldown
- Amber
- Anaconda3
- aria2
- ASAP3
- ase
- ASE
- AUGUSTUS
- AutoDock
- AutoDock-GPU
- AutoDock-Vina
- BamTools
- BCFtools
- BEDTools
- BioPerl
- Biopython
- BLAST+
- Bowtie
- Bowtie2
- Braindecode
- BUSCO
- BWA
- CAMPARI
- chimerax
- CMake
- CP2K
- CRISPResso2
- CUDA
- CuPy
- Dalton
- DIRAC
- DL_POLY_4
- EasyBuild
- Eigen
- ESPResSo
- Faiss
- FFmpeg
- FFTW
- FreeSurfer
- GATK
- GCC
- Geant4
- GPAW
- Grace
- GROMACS
- GULP
- HDF5
- HPCG
- HPL
- HTSeq
- HTSlib
- HyPhy
- ImageMagick
- ITK
- Java
- Julia
- LAMMPS
- OpenBabel
List of Software on the Carya Cluster:
- ABINIT
- Aliases: Aliases exist: foo
- AlphaFold
- AlphaPulldown
- Amber
- ANARCI
- ASAP3
- ase
- ASE
- AUGUSTUS
- AutoDock
- AutoDock-GPU
- AutoDock-Vina
- BamTools
- baseMount (cudatoolkit)
- BaseSpaceCLI
- BCFtools
- BEDOPS
- BEDTools
- BerkeleyGW
- BioPerl
- Biopython
- BLAST+
- BLIS
- Bowtie
- Bowtie2
- Braindecode
- BWA
- CAFE5
- CAMx
- casm
- CD-HIT
- CGNS
- CheMPS2
- Clang
- CMake
- Coot
- CP2K
- CRISPResso2
- CUDA
- CuPy
- Dalton
- Delly
- Desmond
- EasyBuild
- ESPResSo
- Exonerate
- FamDB
- FEniCS
- FEniCSx
- FFmpeg
- FlexiBLAS
- FragPipe
- FreeSurfer
- GATK
- GCC
- GeneMark-ET
- GenomeTools
- GlobalArrays
- GMTSAR
- GOATOOLS
- GPAW
- GPyTorch
- Grace
- GraphicsMagick
- GROMACS
- GULP
- HAL
- HDF5
- HMMER
- HOOMD
- Horovod
- HTSlib
- ImageMagick
- IMB
- Infernal
- JAGS
- Java
- RepeatMasker
- RepeatModeler
- TrimGalore
- XtalOpt